HUM-MOLGEN archive: LITE: NAR Issue 22, Nov 15.

Nucleic Acids Research - Table of Contents Volume 25: January - December 1997: Issue 22 - Nov 15 Location at http://www.oup.co.uk/nar/Volume_25/Issue_22 ---------------------------- The ups and downs of nucleic acid duplex stability: structure-stability studies on chemically-modified DNA:RNA duplexes. Susan M. Freierand Karl-Heinz Altmann1 Pages 4429-4443 Document ID=gka728_gml ---------------------------- Bpl I, a new Bcg I-like restriction endonuclease, which recognizes a symmetric sequence. J. Vitkute, Z. Maneliene, M. Petrusyte and A. Janulaitis Pages 4444-4446 Document ID=gka723_gml ---------------------------- Oligonucleotide dendrimers: synthesis and use as polylabelled DNA probes. M. S. Shchepinov, I. A. Udalova1, A. J. Bridgman and E. M. Southern Pages 4447-4454 Document ID=gka735_gml ---------------------------- The ETS family member ERM contains an [alpha]-helical acidic activation domain that contacts TAFII60. Pierre-Antoine Defossez, Jean-Luc Baert, Monique Monnot1and Yvan de Launoit Pages 4455-4463 Document ID=gka713_gml ---------------------------- Functional recognition of fragmented operator sites by R17/MS2 coat protein, a translational repressor. Derrick E. Fouts, Heather L. True and Daniel W. Celander Pages 4464-4473 Document ID=gka748_gml ---------------------------- The motif V of plum pox potyvirus CI RNA helicase is involved in NTP hydrolysis and is essential for virus RNA replication. Andres Fernandez, Hui Shan Guo, Pilar Saenz, Laureano Simon-Buela, Marta Gomez de Cedron and Juan Antonio Garcia Pages 4474-4480 Document ID=gka740_gml ---------------------------- TAR RNA decoys inhibit Tat-activated HIV-1 transcription after preinitiation com plex formation. Paul R. Bohjanen, Yi Liu and Mariano A. Garcia-Blanco Pages 4481-4486 Document ID=gka737_gml ---------------------------- Binding of Hoechst 33258 to the TAR RNA of HIV-1. Recognition of a pyrimidine bulge-dependent structure. Laurent Dassonneville, Francois Hamy1, Pierre Colson, Claude Houssier and Christian Bailly Pages 4487-4492 Document ID=gka718_gml ---------------------------- The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of [Psi]55in both mitochondrial and cytoplasmic tRNAs. H. F. Becker, Y. Motorin, R. J. Planta and H. Grosjean Pages 4493-4499 Document ID=gka726_gml ---------------------------- New dye-labeled terminators for improved DNA sequencing patterns. B. B. Rosenblum, L. G. Lee, S. L. Spurgeon, S. H. Khan, S. M. Menchen, C. R. Heiner and S. M. Chen Pages 4500-4504 Document ID=gka738_gml ---------------------------- Replication initiation and elongation fork rates within a differentially expressed human multicopy locus in early S phase. Rona S. Scott, K. Young Truong and Jean-Michel H. Vos Pages 4505-4512 Document ID=gka739_gml ---------------------------- Characterization of multiple alternative RNAs resulting from antisense transcription of the PR264/SC35 splicing factor gene . Alain Sureau, Johann Soret, Cecile Guyon, Christophe Gaillard, Stephanie Dumon, Monika Keller, Patricia Crisanti and Bernard Perbal Pages 4513-4522 Document ID=gka747_gml ---------------------------- NMR determination of the conformational and drug binding properties of the DNA heptamer d(GpCpGpApApGpC) in aqueous solution. David B. Davies, Valery I. Pahomov and Alexei N. Veselkov Pages 4523-4531 Document ID=gka719_gml ---------------------------- Higher fidelity of RNA-dependent DNA mispair extension by M184V drug-resistant than wild-type reverse transcriptase of human immunodeficiency virus type 1. Mayla Hsu, Phil Inouye, Lisa Rezende3, Nathalie Richard, Zhuo Li, Vinayaka R. Prasad and Mark A. Wainberg Pages 4532-4536 Document ID=gka732_gml ---------------------------- High affinity binding of MEF-2C correlates with DNA bending. Daniel Meierhans, Martin Sieber and Rudolf K. Allemann Pages 4537-4544 Document ID=gka721_gml ---------------------------- The RNA moiety of chick embryo 5-methylcytosine- DNA glycosylase targets DNA demethylation. Jean-Pierre Jost, Marc Fremont, Michel Siegmann and Jan Hofsteenge Pages 4545-4550 Document ID=gka715_gml ---------------------------- Structural studies on tRNA acceptor stem microhelices: exchange of the discriminator base A73 for G in human tRNALeuswitches the acceptor specificity from leucine to serine possibly by decreasing theArmin U. Metzger, Martha Heckl1, Dieter Willbold, Kri Pages 4551-4556 Document ID=gka725_gml ---------------------------- The yeast 8-oxoguanine DNA glycosylase (Ogg1) contains a DNA deoxyribophosphodiesterase (dRpase) activity. Margarita Sandigursky, Adly Yacoub, Mark R. Kelley, Yi Xu, William A. Franklin and Walter A. Deutsch, Pages 4557-4561 Document ID=gka736_gml ---------------------------- Placement of the [alpha]-sarcin loop within the 50S subunit: evidence derived using a photolabile oligodeoxynucleotide probe. Parimi Muralikrishna, Rebecca W. Alexander and Barry S. Cooperman Pages 4562-4569 Document ID=gka729_gml ---------------------------- RAGA: RNA sequence alignment by genetic algorithm. Cedric Notredame, Emmet A. O'Brien and Desmond G. Higgins Pages 4570-4581 Document ID=gka731_gml ---------------------------- 2'-Fluoro modified nucleic acids: polymerase-directed synthesis, properties and stability to analysis by matrix-assisted laser desorption/ionization mass spectrometry. Tetsuyoshi Ono, Mark Scalf and Lloyd M. Smith Pages 4581-4588 Document ID=gka727_gml ---------------------------- Solution structure of RNA duplexes containing alternating CG base pairs: NMR study of r(CGCGCG)2and 2'-O-Me(CGCGCG)2 under low salt conditions . Mariusz Popenda, Ewa Biala, Jan Milecki and Ryszard W. Adamiak Pages 4589-4598 Document ID=gka741_gml ---------------------------- Crystal structure of 2'-O-Me(CGCGCG)2, an RNA duplex at 1.30 A resolution. Hydration pattern of 2'-O-methylated RNA. Dorota A. Adamiak, Jan Milecki, Mariusz Popenda, Ryszard W. Adamiak, Zbigniew Dauter and Wojciech R. Rypniewski Pages 4599-4607 Document ID=gka742_gml ---------------------------- Opening of the extraordinarily stable mini-hairpin d(GCGAAGC). Beatrice Jolles, Matthieu Refregiers and Alain Laigle Pages 4608-4613 Document ID=gka717_gml ---------------------------- Deoxyribonucleotide-containing RNAs: a novel class of templates for HIV-1 reverse transcriptase. Severin O. Gudima, Ekaterina G. Kazantseva, Dmitry A. Kostyuk, Irina L. Shchaveleva, Olga I. Grishchenko, Lyudmila V. Memelova and Sergey N. Kochetkov Pages 4614-4618 Document ID=gka720_gml ---------------------------- Analysis of the yeast genome: identification of new non-coding and small ORF-containing RNAs. Wendy M. Olivas, Denise Muhlrad and Roy Parker Pages 4619-4625 Document ID=gka749_gml ---------------------------- Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family. Jacob Z. Dalgaard, Amar J. Klar, Michael J. Moser, William R. Holley, Aloke Chatterjee and I. Saira Mian1 Pages 4626-4638 Document ID=gka746_gml ---------------------------- Relative stability of triplexes containing different numbers of T·AT and C+·GC triplets. Melanie D. Keppler and Keith R. Fox Pages 4644-4649 Document ID=gka722_gml ---------------------------- Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions. Vera Gorbunova and Avraham A. Levy Pages 4650-4657 Document ID=gka724_gml ---------------------------- Both the polypyrimidine tract and the 3' splice site function prior to the first step of splicing in fission yeast. Charles M. Romfo and Jo Ann Wise Pages 4658-4665 Document ID=gka712_gml ---------------------------- Baculovirus-mediated expression and characterization of the full-length murine DNA methyltransferase. Sriharsa Pradhan, Dale Talbot, Mi Sha, Jack Benner, Linda Hornstra, En Li, Rudolf Jaenisch and Richard J. Roberts Pages 4666-4673 Document ID=gka730_gml ---------------------------- RnaViz, a program for the visualisation of RNA secondary structure. Peter De Rijk and Rupert De Wachter Pages 4679-4684 Document ID=gka734_gml ---------------------------- Exploiting unassigned codons in Micrococcus luteus for tRNA-based amino acid mutagenesis. Anne K. Kowal and John S. Oliver Pages 4685-4689 Document ID=gka733_gml ---------------------------- Construction of a semisynthetic antibody library using trinucleotide oligos. M. Braunagel and M. Little Pages 4690-4691 Document ID=gka681_gml ---------------------------- Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Salah M. Aljanabi and Iciar Martinez1 Pages 4692-4693 Document ID=gka744_gml ---------------------------- Adaptor-tagged competitive PCR: a novel method for measuring relative gene expression. Kikuya Kato Pages 4694-4696 Document ID=gka673_gml ---------------------------- Monitoring the amplification of CATCH, a 3SR based cooperatively coupled isothermal amplification system, by fluorimetric methods. Ralf Ehricht, Thomas Kirner, Thomas Ellinger, Petra Foerster and John S. McCaskill Pages 4697-4699 Document ID=gka743_gml ---------------------------- Isolation of nuclei for chromatin analysis in fission yeast. Jacqueline A. Mason and Jane Mellor Pages 4700-4701 Document ID=gka714_gml ---------------------------- If you experience any problems, or wish to make a comment, please reply to this message ************************************************************************ Dr. Arthur A.B. Bergen Department of Ophthalmogenetics The Netherlands Ophthalmic Research Institute (IOI) Royal Academy of Sciences of the Netherlands (KNAW) ** Snail-mail: ** ** FAX: ** ** E-mail: ** P.O.Box 12141 (+31)206916521 A.Bergen@IOI.KNAW.NL 1100 AC Amsterdam The Netherlands ************************************************************************