home   genetic news   bioinformatics   biotechnology   literature   journals   ethics   positions   events   sitemap
 
  HUM-MOLGEN -> Genetic News | search  
 

BioGPS: a centralized online resource for gene annotation

 
  January, 15 2010 16:34
your information resource in human molecular genetics
 
     
Retrieval and analysis of gene annotation is now a central step in many genomic workflows. There is a large number of independent online resources that provide detailed annotations for specific categories. Thus, there is a clear need for centralized resources that facilitate integrated analyses.

A recent paper in Genome Biology describes BioGPS, a freely available online resource that provides a centralized gene annotation portal. BioGPS, developed by Andrew Su et al, gives the opportunity of visualizing additional gene annotation resources as plugin layers. There are more than 150 available plugins and some categories are: Literature Search (PubMed, Google Scholar), Gene Portals (Ensembl, GeneCards), Genetics (dbSNP, HapMap), Pathway Tools (KEGG, STRING) and Reagent Providers. Users can register and customize their plugin profiles.

The main primary resource at BioGPS is the Gene Atlas/SymAtlas, a highly cited and used online tool that provides detailed gene expression data for humans and mice in a large number of tissues and cells.

BioGPS uses a platform that allows for the easy and fast integration of further resources. It is expected that BioGPS and similar resources will allow faster and easier integrated analyses of genomics data, such as those coming from genome-wide expression and association studies.

On this 2010, I will keep writing about further papers and tools of interest, continuing with this useful international bridge between bioinformatics / computational biology and human genetics / genomics (and it is free). Stay tuned.

Links

Andrew Su, PhD

Computational Biology Group, Genomics Institute of the Novartis Research Foundation, San Diego, USA.

BioGPS

Wu C, Orozco C, Boyer J, Leglise M, Goodale J, Batalov S, Hodge CL, Haase J, Janes J, Huss JW 3rd, Su AI. BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol. 2009 Nov 17;10(11):R130.  Freely available full text paper.

Prof. Dr. Diego A. Forero, MD, PhD

Editor, hum-molgen.org


Message posted by: Diego Forero

print this article mail this article
Bookmark and Share this page (what is this?)

Social bookmarking allows users to save and categorise a personal collection of bookmarks and share them with others. This is different to using your own browser bookmarks which are available using the menus within your web browser.

Use the links below to share this article on the social bookmarking site of your choice.

Read more about social bookmarking at Wikipedia - Social Bookmarking

Latest News
Variants Associated with Pediatric Allergic Disorder

Mutations in PHF6 Found in T-Cell Leukemia

Genetic Risk Variant for Urinary Bladder Cancer

Antibody Has Therapeutic Effect on Mice with ALS

Regulating P53 Activity in Cancer Cells

Anti-RNA Therapy Counters Breast Cancer Spread

Mitochondrial DNA Diversity

The Power of RNA Sequencing

‘Pro-Ageing' Therapy for Cancer?

Niche Genetics Influence Leukaemia

Molecular Biology: Clinical Promise for RNA Interference

Chemoprevention Cocktail for Colon Cancer

more news ...

Generated by News Editor 2.0 by Kai Garlipp
WWW: Kai Garlipp, Frank S. Zollmann.
7.0 © 1995-2017 HUM-MOLGEN. All rights reserved. Liability, Copyright and Imprint.