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10th Variant Effect Prediction Training Course

 
  July 03, 2026  
     
 


HUGO, Athens, Greece
27 - 30 September, 2026


Topics

The course is focused on germline/constitutive variants, not tumor/somatic.

Exome diagnostics where technology fails

  • Clinical reasons
  • Technical reasons
  • Exceptions - thinking out of the box
  • Options beyond the exome
  • Phenotype description - Human Phenotype Ontology

Genome Browsers

  • Ensembl (workshop)
  • Ensembl - variant annotation with VEP
  • UCSC (workshop)
  • UCSC recommended track sets (SNV & CNV)
  • IGV - short read, long read, RNA

Databases

  • DNA diagnostics = sharing data
  • HGVS nomenclature (workshop)
  • Gene variant databases (LSDBs)
  • gnomAD

RNA and other functional/prediction tests

  • RNA splicing (theory)
  • Mechanisms of RNA disease
  • Splice prediction tools
  • Interpreting RNA data (practice)

Variant classification / priorization

  • ACMG variant classification (theory)
  • Online tools - MobiDetails (workshop)
  • SNV variant classification basic (workshop)
  • SNV variant classification advanced (workshop)
  • CNV variant classification (workshop)
  • Experiences using AI based variant prioritization over 20,000 exomes: lessons learned
 
 
Organized by: HUGO
Invited Speakers:

Unlock the Potential of Genomic Data Interpretation

 

Next-Generation Sequencing (NGS) has dramatically accelerated the generation of variant data; however, the processes of data analysis and variant interpretation remain some of the most challenging and time-intensive aspects. As genomic testing becomes increasingly vital in clinical diagnostics, it is essential to gather and curate evidence to determine if a variant has been reported before and to understand its potential impact.

Although numerous computational tools exist to aid interpretation, many users find it difficult to choose the most suitable methods and to use these tools effectively.

This course aims to empower you to:

Identify the Best Resources: Develop skills to locate and apply the most reliable tools for variant interpretation across multiple genome browsers.

Master HGVS Nomenclature: Gain practical experience with HGVS standards and learn how to accurately name complex variants.

Select Appropriate Analysis Techniques: Understand which analytical approaches to use and recognize common challenges within NGS workflows.

Confidently Classify Variants: Apply the ACMG classification framework, including the latest guidelines and updates.

Utilise Phenotype Ontologies: Discover the Human Phenotype Ontology (HPO) and how HPO terms support effective variant prioritization.

Delve into Advanced Topics: Expand your knowledge with RNA analysis, mitochondrial genomics, and additional specialized subjects.

Whether you are new to DNA variant interpretation or an experienced professional, this course provides the essential knowledge and practical tools to refine your skills and keep pace with the evolving landscape of genomics.

 
Deadline for Abstracts: 31 August 2026
 
Registration: Visit: https://www.veptc.hugo-int.org
E-mail: info@meeting-makers.com
 
 
   
 
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