European school of Genetic Medicine, Bertinoro di Romagna (Italy)
18th-22nd march
TOPIC 1: From Sequences to Genomes
W. Mewes, D. Frishman
Structuring the sequence space
Algorithms for Sequence Analysis; Alignments, FASTA, BLAST
Evolution
Structuring the sequence space in terms of structure and function:
GO / Funcat
STRING
SIMAP
Scop, Profam
Structuring the species space
PEDANT
Metagenome approaches
Non-coding sequencesTOPIC 2: Methods and Resources
J. Ernst, V. Stümpflen, T. Rattei
Algorithms for Bioinformatics
Resources on the WWW: databases, bioconductor, R-package
Data Mining
Data integration and methods (Semantics, portals, BioXM etc.) TOPIC 3: Regulation, networks
M. Scherf, R. Zimmer, J. Ernst
Regulatory elements and modules; principles of gene regulation; bioinformatics methods for gene regulation and the interpretation of expression analysis data TOPIC 4: Protein structures
A. Tramontano TOPIC 5: Bioinformatics for genetics Mendel, linkage equilibrium, association studies, HAP-mapr
DAY 5: Omics and Systems Biology
W. Mewes
Basics in Systems Biology
Metabolomics
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Invited Speakers:
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J. Ernst (Munich, Germany), D. Frishman (Munich, Germany), T. Rattei (Munich, Germany), M. Scherf (Munich, Germany), V. Stümpflen (Munich, Germany), A. Tramontano (Rome, Italy), R. Zimmer (Munich, Germany)
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