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Nucleic Acids Research - Table of Contents Volume 26, January - December 1998: Issue 07 - URL: http:/www.oup.co.uk/nar/Volume_26/Issue_07/ SURVEY AND SUMMARY: Interaction of Ku protein and DNA-dependent protein kinase catalytic subunit with nucleic acids William S. Dynan and Sunghan Yoo Pages 1551-1559 Document ID = nar_26_07_gkb289_gml ---------------------------------- Recognition and manipulation of branched DNA by the RusA Holliday junction resolvase of Escherichia coli Sau N. Chan, Simon D. Vincent and Robert G. Lloyd Pages 1560-1566 Document ID = nar_26_07_gkb319_gml ---------------------------------- Selecting optimal oligonucleotide composition for maximal antisense effect following streptolysin O-mediated delivery into human leukaemia cells R. V. Giles, D. G. Spiller, J. Grzybowski, R. E. Clark, P. Nicklin and D. M. Tidd Pages 1567-1575 Document ID = nar_26_07_gkb320_gml ---------------------------------- SnoRNA-guided ribose methylation of rRNA: structural features of the guide RNA duplex influencing the extent of the reaction Jerome Cavaille and Jean-Pierre Bachellerie Pages 1576-1587 Document ID = nar_26_07_gkb281_gml ---------------------------------- Mechanisms of DNA damage by chromium(V) carcinogens Rathindra N. Bose, B. Stephen Fonkeng, Shadi Moghaddas and Diane Stroup Pages 1588-1596 Document ID = nar_26_07_gkb303_gml ---------------------------------- Drosophila clipper/CPSF 30K is a post-transcriptionally regulated nuclear protein that binds RNA containing GC clusters Chunyang Bai and Peter P. Tolias Pages 1597-1604 Document ID = nar_26_07_gkb304_gml ---------------------------------- A conserved structural element in horse and mouse IGF2 genes binds a methylation sensitive factor Kerstin Otte, Devapriya Choudhury, Marika Charalambous, Wilhelm Engstrom and Bjorn Rozell Pages 1605-1612 Document ID = nar_26_07_gkb317_gml ---------------------------------- Purification, characterization and molecular cloning of TGP1, a novel G-DNA binding protein from Tetrahymena thermophila Quan Lu, Ted Schierer, Sang-Gu Kang and Eric Henderson Pages 1613-1620 Document ID = nar_26_07_gkb313_gml ---------------------------------- Identification of stress-responsive genes in Caenorhabditis elegans using RT-PCR differential display Wilson N. Tawe, Marie-Luise Eschbach, Rolf D. Walter and Kimberly Henkle-Duhrsen Pages 1621-1627 Document ID = nar_26_07_gkb282_gml ---------------------------------- Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences Timothy M. Rose, Emily R. Schultz, Jorja G. Henikoff, Shmuel Pietrokovski, Claire M. McCallum, Steven Henikoff Pages 1628-1635 Document ID = nar_26_07_gkb321_gml ---------------------------------- The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA Mark Helm, Herve Brule, Francoise Degoul, Claude Cepanec, Jean-Paul Leroux, Richard Giege, Catherine Florentz Pages 1636-1643 Document ID = nar_26_07_gkb283_gml ---------------------------------- Apolipoprotein B RNA sequence 3[prime] of the mooring sequence and cellular sources of auxiliary factors determine the location and extent of promiscuous editing Mark P. Sowden, Matthew J. Eagleton, Harold C. Smith Pages 1644-1652 Document ID = nar_26_07_gkb301_gml ---------------------------------- Isolation of novel human and mouse genes of the recA/RAD51 recombination-repair gene family Richard Cartwright, Alison M. Dunn, Paul J. Simpson, Cathryn E. Tambini, John Thacker Pages 1653-1659 Document ID = nar_26_07_gkb308_gml ---------------------------------- DNA minor groove recognition by a tetrahydropyrimidinium analogue of Hoechst 33258: NMR and molecular dynamics studies of the complex with d(GGTAATTACC)2 Clare E. Bostock-Smith, Charles A. Laughton, Mark S. Searle Pages 1660-1667 Document ID = nar_26_07_gkb297_gml ---------------------------------- Sequence specific interaction of Mycobacterium smegmatis topoisomerase I with duplex DNA Tisha Bhaduri, Devanjan Sikder, Valakunja Nagaraja Pages 1668-1674 Document ID = nar_26_07_gkb305_gml ---------------------------------- Dimerization of the testis brain RNA-binding protein (translin) is mediated through its C-terminus and is required for DNA- and RNA-binding Xin-Qi Wu, Lihui Xu, Norman B. Hecht Pages 1675-1680 Document ID = nar_26_07_gkb292_gml ---------------------------------- Mutational analysis of p50E4F suggests that DNA binding activity is mediated through an alternative structure in a zinc finger domain that is regulated by phosphorylation Robert J. Rooney, Kristen Rothammer, Elma R. Fernandes Pages 1681-1688 Document ID = nar_26_07_gkb291_gml ---------------------------------- Modelling the secondary structures of slippage-prone hypervariable RNA regions: the example of the tiger beetle 18S rRNA variable region V4 John M. Hancock, Alfried P. Vogler,2 Pages 1689-1699 Document ID = nar_26_07_gkb295_gml ---------------------------------- Isolation and characterization of a human cDNA for mRNA 5[prime]-capping enzyme Toshiko Yamada-Okabe, Rikuo Doi, Osamu Shimmi, Mikio Arisawa, Hisafumi Yamada-Okabe Pages 1700-1706 Document ID = nar_26_07_gkb306_gml ---------------------------------- Escherichia coli RNA and DNA polymerase bypass of dihydrouracil: mutagenic potential via transcription and replication Jiang Liu, Paul W. Doetsch Pages 1707-1712 Document ID = nar_26_07_gkb288_gml ---------------------------------- The processivity of DNA synthesis exhibited by drug-resistant variants of human immunodeficiency virus type-1 reverse transcriptase Orna Avidan, Amnon Hizi Pages 1713-1717 Document ID = nar_26_07_gkb294_gml ---------------------------------- Baculovirus surface display: construction and screening of a eukaryotic epitope library Wolfgang Ernst, Reingard Grabherr, Daniela Wegner, Nicole Borth, Andreas Grassauer, Hermann Katinger Pages 1718-1723 Document ID = nar_26_07_gkb312_gml ---------------------------------- Signal-dependent degradation of I[kappa]B[alpha] is mediated by an inducible destruction box that can be transferred to NF-[kappa]B, Bcl-3 or p53 F. Gregory Wulczyn, Daniel Krappmann, Claus Scheidereit Pages 1724-1730 Document ID = nar_26_07_gkb280_gml ---------------------------------- Sequence-specific DNA recognition by the Myb-like domain of the human telomere binding protein TRF1: a model for the protein-DNA complex Peter Konig, Louise Fairall, Daniela Rhodes Pages 1731-1740 Document ID = nar_26_07_gkb284_gml ---------------------------------- Non-canonical inteins Alexander E. Gorbalenya Pages 1741-1748 Document ID = nar_26_07_gkb298_gml ---------------------------------- The joining of blunt DNA ends to 3[prime]-protruding single strands in Escherichia coli Jeff King, Cecilia Fairley, William Morgan Pages 1749-1754 Document ID = nar_26_07_gkb314_gml ---------------------------------- An RNA aptamer to the xanthine/guanine base with a distinctive mode of purine recognition Daisuke Kiga, Yasuhiro Futamura, Kensaku Sakamoto, Shigeyuki Yokoyama Pages 1755-1760 Document ID = nar_26_07_gkb307_gml ---------------------------------- E1A represses apolipoprotein AI enhancer activity in liver cells through a pRb- and CBP-independent pathway Edward J. Kilbourne, Mark J. Evans, Sotirios K. Karathanasis Pages 1761-1768 Document ID = nar_26_07_gkb287_gml ---------------------------------- Specific tandem GG to TT base substitutions induced by acetaldehyde are due to intra-strand crosslinks between adjacent guanine bases Tomonari Matsuda, Masanobu Kawanishi, Takashi Yagi, Saburo Matsui, Hiraku Takebe Pages 1769-1774 Document ID = nar_26_07_gkb300_gml ---------------------------------- Characterization of a novel trypanosomatid small nucleolar RNA Alexander Levitan, Yu-xin Xu, Claudia Ben-Dov, Herzel Ben-Shlomo, Yafei Zhang, Shulamit Michaeli Pages 1775-1783 Document ID = nar_26_07_gkb318_gml ---------------------------------- Overlapping RNA and DNA binding domains of the wt1 tumor suppressor gene product Nabeel Bardeesy, Jerry Pelletier Pages 1784-1792 Document ID = nar_26_07_gkb290_gml ---------------------------------- Cruciform-extruding regulatory element controls cell-specific activity of the tyrosine hydroxylase gene promoter Ella L. Kim, Hu Peng, Frederico M. Esparza, Sergei Z. Maltchenko, Michal K. Stachowiak Pages 1793-1800 Document ID = nar_26_07_gkb315_gml ---------------------------------- Correct usage of multiple transcription initiation sites and C/EBP-dependent transcription activation of the rat XDH/XO TATA-less promoter requires downstream elements located in the coding region ofMelissa P. Clark, Chi-Wing Chow, Jean E. Rinaldo, Rog Pages 1801-1806 Document ID = nar_26_07_gkb316_gml ---------------------------------- Terminal transferase-dependent PCR: a versatile and sensitive method for in vivo footprinting and detection of DNA adducts Jun-ichiro Komura, Arthur D. Riggs Pages 1807-1811 Document ID = nar_26_07_gkb299_gml ---------------------------------- Positional cloning without a genome map: using `Targeted RFLP Subtraction' to isolate dense markers tightly linked to the regA locus of Volvox carteri J. Corrette-Bennett, M. Rosenberg, M. Przybylska, E. Ananiev, D. Straus Pages 1812-1818 Document ID = nar_26_07_gkb285_gml ---------------------------------- Stimulation and suppression of PCR-mediated recombination Michael S. B. Judo, Andrew B. Wedel, Charles Wilson Pages 1819-1825 Document ID = nar_26_07_gkb293_gml ---------------------------------- Position-independent expression of a human nerve growth factor-luciferase reporter gene cloned on a yeast artificial chromosome vector Fred A. M. Asselbergs, Rita Grossenbacher, Rainer Ortmann, Bastian Hengerer, Gary K. McMaster, Esther Sutter, Roland Widmer , Frank Buxton Pages 1826-1833 Document ID = nar_26_07_gkb296_gml ---------------------------------- A common 40 amino acid motif in eukaryotic RNases H1 and caulimovirus ORF VI proteins binds to duplex RNAs Susana M. Cerritelli, Oleg Y. Fedoroff, Brian R. Reid, Robert J. Crouch Pages 1834-1840 Document ID = nar_26_07_gkb286_gml ---------------------------------- Interaction between the N-terminus of human topoisomerase I and SV40 large T antigen Paul Haluska Jr, Ahamed Saleem, Troy K. Edwards, Eric H. Rubin Pages 1841-1847 Document ID = nar_26_07_gkb302_gml ---------------------------------- An improved PCR-mutagenesis strategy for two-site mutagenesis or sequence swapping between related genes Ralf D. Kirsch, Etienne Joly Pages 1848-1850 Document ID = nar_26_07_gkb309_gml ---------------------------------- Intramolecular derivatization of 2[prime]-amino-pyrimidine modified RNA with functional groups that is compatible with re-amplification Marian J. Kujau, Stefan Wolfl Pages 1851-1853 Document ID = nar_26_07_gkb311_gml ---------------------------------- Inosine 5[prime]-triphosphate can dramatically increase the yield of NASBA products targeting GC-rich and intramolecular base-paired viroid RNA Kenji Nakahara, Tatsuji Hataya, Ichiro Uyeda Pages 1854-1856 Document ID = nar_26_07_gkb310_gml ---------------------------------- If you experience any problems, or wish to make a comment, please reply to this message ************************************************************************ Dr. Arthur A.B. Bergen Department of Ophthalmogenetics The Netherlands Ophthalmic Research Institute (IOI) Royal Academy of Sciences of the Netherlands (KNAW) ** Snail-mail: ** ** FAX: ** ** E-mail: ** P.O.Box 12141 (+31)206916521 A.Bergen@IOI.KNAW.NL 1100 AC Amsterdam The Netherlands ************************************************************************