HUM-MOLGEN archive: LITE: Nucleic Acids Research 24:01

========================================== Nucleic Acids Research - ISSN 0305 1048 Volume 24:01 1 January 1996 ========================================== Executive Editors:- R. T. Walker, Birmingham, UK R. J. Roberts, Beverly, MA, USA K. Calame, New York, NY, USA I. C. Eperon, Leicester, UK M. J. Gait, Cambridge, UK H. J. Gross, Wurzburg, Germany R. I. Gumport, Urbana, IL, USA R. B. Hallick, Tucson, AZ, USA S. Linn, Berkeley, CA, USA R. T. Simpson, University Park, PA, USA ========================================== CONTENTS ========================================== TI GenBank AU Dennis A. Benson , Mark Boguski , David J. Lipman and James Ostell Pages 1-5 TI The European Bioinformatics Institute (EBI) databases AU Patricia Rodriguez-Tome , Peter J. Stoehr , Graham N. Cameron and Tomas P. Flores Pages 6-13 TI The Genome Sequence DataBase (GSDB): meeting the challenge of genomic sequencing AU Gifford Keen , Jillian Burton , David Crowley , Emily Dickinson , Ada Espinosa-Lujan , Ed Franks , Carol Harger , Mo Manning , Shelley March , Mia McLeod , John O'Neill , Alicia Power , Maria Pumilia , Rhonda Reinert , David Rider , John Rohrlich , Jolene Schwertfeger , Linda Smyth , Nina Thayer , Charles Troup and Chris Fields Pages 13-16 TI The PIR-International Protein Sequence Database AU David G. George , Winona C. Barker , Hans- Werner Mewes Pages 17-21 TI The SWISS-PROT protein sequence data bank and its new supplement TREMBL AU Amos Bairoch and Rolf Apweiler Pages 21-25 TI The metabolic pathway collection from EMP: the enzymes and metabolic pathways database AU Evgeni Selkov , Svetlana Basmanova , Terry Gaasterland , Elena Panyushkina , Lyudmila Pronevitch , Evgeni Selkov, Jr and Ilya Yunus Pages 26-29 TI Compilation of DNA sequences of Escherichia coli K12 (ECD and ECDC; update 1995) AU Manfred Kroeger and Ralf Wahl Pages 29-32 TI EcoCyc: an encyclopedia of Escherichia coli genes and metabolism AU Peter D. Karp , Monica Riley Pages 32-40 TI Genes and proteins of Escherichia coli (GenProtEc) AU Monica Riley and David B. Space Pages 40-40 TI NRSub: a non-redundant database for Bacillus subtilis AU Guy Perriere , Ivan Moszer Pages 41-45 TI YPD-A database for the proteins of Saccharomyces cerevisiae AU James I. Garrels Pages 46-49 TI LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces AU Reinhard Doelz , Marie-Odile Mosse Pages 50-52 TI FlyBase: the Drosophila database AU The FlyBase Consortium Pages 53-56 TI Improvements to the GDB tm Human Genome Data Base AU Kenneth H. Fasman , Stanley I. Letovsky , Robert W. Cottingham and David T. Kingsbury Pages 57-63 TI Molecular probe data base (MPDB) AU Maria Giuseppina Campi Pages 64-67 TI Compilation of tRNA sequences and sequences of tRNA genes AU Mathias Sprinzl , Clemens Steegborn , Frank Huebel Pages 68-72 TI Small RNA database AU Jian Gu and Ram Reddy Pages 73-75 TI The uRNA database AU Christian Zwieb Pages 76-79 TI The Signal Recognition Particle Database (SRPDB) AU Niels Larsen and Christian Zwieb Pages 80-81 TI The Ribosomal Database Project (RDP) AU Bonnie L. Maidak, Gary J. Olsen, Niels Larsen , Michael J. McCaughey and Carl R. Woese Pages 82-85 TI Database on the structure of small ribosomal subunit RNA AU Yves Van de Peer , Stefan Nicolai , Peter De Rijk and Rupert De Wachter Pages 86-91 TI Database on the structure of large ribosomal subunit RNA AU Peter De Rijk , Yves Van de Peer and Rupert De Wachter Pages 92-97 TI The RNA modification database AU Pamela F. Crain Pages 98-99 TI The haemophilia A mutation search test and resource site, home page of the factor VIII mutation database: HAMSTeRS AU Adam I . Wacey , Geoffrey Kemball-Cook Pages 100-103 TI Haemophilia B (sixth edition): a database of point mutations and short additions and deletions AU F. Giannelli , P. M. Green , S. S. Sommer Pages 103-119 TI Databases and software for the analysis of mutations in the human p53 gene, the human hprt gene and the lacZ gene in transgenic rodents AU Neal F. Cariello , George R. Douglas Pages 119-120 TI APC gene: database of germline and somatic mutations in human tumors and cell lines AU Christophe Beroud and Thierry Soussil , Pages 121-124 TI Database of mutations that alter the large tumor antigen of simian virus 40 AU Timothy D. Kierstead and James M. Pipas Pages 125-127 TI PAH Mutation Analysis Consortium Database: a database for disease-producing and other allelic variation at the human PAH locus AU Liem Hoang , Susan Byck , Lynne Prevost and Charles R. Scriver (curators) Pages 127-132 TI A cholinesterase genes server (ESTHER): a database of cholinesterase-related sequences for multiple alignments, phylogenetic relationships, mutations and structural data retrieval AU Xavier Cousin Pages 132-137 TI Software and database for the analysis of mutations in the human FBN1 gene AU Gwenaelle Collod Pages 137-141 TI Somatic point mutations in the p53 gene of human tumors and cell lines: updated compilation AU M. Hollstein , B. Shomer Pages 141-146 TI p53 gene mutation: software and database AU Christophe Beroud , Frederique Verdier and Thierry Soussi Pages 147-150 TI The androgen receptor gene mutations database AU Bruce Gottlieb Pages 151-154 TI The glucocorticoid receptor resource AU Mark Danielsen and Elisabeth Martinez Pages 155-156 TI Protein C deficiency: summary of the 1995 database update AU Pieter H. Reitsma Pages 157-159 TI BTKbase, mutation database for X-linked agammaglobulinemia (XLA) AU Mauno Vihinen Pages 160-166 TI The 16S ribosomal RNA mutation database (16SMDB) AU Kathleen L. Triman Pages 166-168 TI The 23S Ribosomal RNA Mutation Database (23SMDB) AU Kathleen L. Triman Pages 169-171 TI A general database for DNA sequence changes induced by mutagenesis of several bacterial and mammalian genes AU Franklin Hutchinson and J. Edward Donnellan, Jr Pages 172-176 TI MITOMAP: a human mitochondrial genome database AU Andreas M. Kogelnik Pages 177-179 TI The SWISS-2DPAGE database of two- dimensional polyacrylamide gel electrophoresis, its status in 1995 Ron D. Appel , Jean-Charles Sanchez Pages 180-182 TI Progress with the PRINTS protein fingerprint database AU T. K. Attwood , M. E. Beck Pages 182-189 TI The PROSITE database, its status in 1995 AU Amos Bairoch , Philipp Bucher Pages 189-196 TI The Blocks database-a system for protein classification AU Shmuel Pietrokovski , Jorja G. Henikoff and Steven Henikoff Pages 197-201 TI The HSSP database of protein structure- sequence alignments AU Reinhard Schneider and Chris Sander Pages 201-205 TI The FSSP database: fold classification based on structure-structure alignment of proteins AU Liisa Holm and Chris Sander Pages 206-210 TI The SBASE protein domain library, Release 4.0: a collection of annotated protein sequence segments AU Janos Murvai Pages 210-214 TI Codon usage tabulated from the international DNA sequence databases AU Yasukazu Nakamura , Ken-nosuke Wada , Takashi Gojobori and Toshimichi Ikemura Pages 214-215 TI TransTerm: a database of translational signals AU Mark E. Dalphin , Chris M. Brown , Peter A. Stockwell and Warren P. Tate Pages 216-218 TI GRBase, a database linking information on proteins involved in gene regulation AU Bruce Collier and Mark Danielsen Pages 219-220 TI The ENZYME data bank in 1995 AU Amos Bairoch Pages 221-222 TI REBASE-restriction enzymes and methylases AU Richard J. Roberts and Dana Macelis Pages 223-236 TI The Ribonuclease P Database AU James W. Brown Pages 236-238 TI TRANSFAC: a database on transcription factors and their DNA binding sites AU E. Wingender , P. Dietze , H. Karas and R. Knueppel Pages 238-241 TI MHCPEP-a database of MHC-binding peptides: update 1995 AU Vladimir Brusic , George Rudy , Anthony P. Kyne and Leonard C. Harrison Pages 242-244 TI Histone Sequence Database: a compilation of highly-conserved nucleoprotein sequences AU Andreas D. Baxevanis and David Landsman Pages 245-247 TI O-GLYCBASE: a revised database of O - glycosylated proteins AU Jan E. Hansen Pages 248-252 ============================================= Nucleic Acids Research is published 25 times a year by Oxford University Press. The papers listed above will appear in the 1 January 1996 issue. 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