HUM-MOLGEN archive: LITE: Nucleic Acids Research: issues 23:18 and 23:19

============================================= Nucleic Acids Research - ISSN 0305 1048 Volume 23:18 25 September 1995 ============================================= Executive Editors:- R. T. Walker, Birmingham, UK R. J. Roberts, Beverly, MA, USA K. Calame, New York, NY, USA I. C. Eperon, Leicester, UK M. J. Gait, Cambridge, UK H. J. Gross, Wurzburg, Germany R. I. Gumport, Urbana, IL, USA R. B. Hallick, Tucson, AZ, USA S. Linn, Berkeley, CA, USA R. T. Simpson, University Park, PA, USA ============================================= CONTENTS ============================================= AU Kelman-Z. O'Donnell-M-O. TI Structural and functional similarities of prokaryotic and eukaryotic DNA polymerase sliding clamps SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3613-3620 AU Hiom-K. West-S-C. TI Characterisation of RuvAB-Holliday junction complexes by glycerol gradient sedimentation SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3621-3626 AU Bates-P-J. Dosanjh-H-S. Kumar-S. Jenkins-T-C. Laughton-C-A. Neidle-S. TI Detection and kinetic studies of triplex formation by oligodeoxynucleotides using real-time biomolecular interaction analysis (BIA) SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3627-3632 AU Breitschopf-K. Achsel-T. Busch-K. Gross-H-J. TI Identity elements of human tRNALeu: structural requirements for converting human tRNASer into a leucine acceptor in vitro SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3633-3637 AU Kataoka-N. Ohno-M. Moda-I. Shimura-Y TI Identification of the factors that interact with NCBP, an 80 kDa nuclear cap binding protein SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3638-3641 AU Nashimoto-M. TI Conversion of mammalian tRNA 3' processing endoribonuclease to four-base-recognizing RNA cutters SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3642-3647 AU Marzabal-S. DuBois-S. Thielking-V. Cano-A. Eritja-R. Guschlbauer-W. TI Dam methylase from Escherichia coli: kinetic studies using modified DNA oligomers: hemimethylated substrates SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3648-3655 AU Borman-A-M. Bailly-J-L. Girard-M. Kean-K-M. TI Picornavirus internal ribosome entry segments: comparison of translation efficiency and the requirements for optimal internal initiation of translation in vitro SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3656-3663 AU O'Prey-J. Harrison-P-R. TI Tissue-specific regulation of the rabbit 15-lipoxygenase gene in erythroid cells by a transcriptional silencer SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3664-3672 AU Pan-C. Mason-T-L. TI Identification of the yeast nuclear gene for the mitochondrial homologue of bacterial ribosomal protein L16 SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3673-3677 AU Wood-A-A. Nunn-C-M. Czarny-A. Boykin-D-W. Neidle-S. TI Variability in DNA minor groove width recognised by ligand binding: the crystal structure of a bis-benzimidazole compound bound to the DNA duplex d(CGCGAATTCGCG)2 SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3678-3684 AU Kato-K. TI Description of the entire mRNA population by a 3' end cDNA fragment generated by class IIS restriction enzymes SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3685-3690 AU Campbell-C. Marondel-I. Montgomery-K. Krauter-K. Kucherlapati-R. TI Unequal homologous recombination of human DNA on a yeast artifical chromosome SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3691-3695 AU Bourn-W-R. Babb-B. TI Computer assisted identification and classification of streptomycete promoters SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3696-3703 AU Kurose-K. Hata-K. Hattori-M. Sakaki-Y. TI RNA polymerase III dependence of the human L1 promoter and possible participation of the RNA polymerase II factor YY1 in the RNA polymerase III transcription system SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3704-3709 AU Kunz-C. Pebler-S. Otte-J. von der Ahe-D. TI Differential regulation of plasminogen activator and inhibitor gene transcription by the tumor suppressor p53 SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3710-3717 AU Gultyaev-A-P. van Batenburg-F-H-D. Pleij-C-W-A. TI The influence of a metastable structure in plasmid primer RNA on antisense RNA binding kinetics SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3718-3725 AU Labrie-C. Lee-B-H. Mathews-M-B. TI Transcription factors RFX1/EF-C and ATF-1 associate with adenovirus E1A-responsive element of the human proliferating cell nuclear antigen promoter SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3732-3741 AU Henderson-G-B. Stein-C-A. TI 5'-Cholesteryl-phosphorothioate oligodeoxynucleotides: potent inhibition of methotrexate transport and antagonism of methotrexate toxicity in cells containing the reduced-folate carrier SO Nucleic-Acids-Res. 1995 September 25. 23(18) P. 3726-3731 AU Liu-R. Orgel-L-E. TI Enzymatic synthesis of polymers containing nicotinamide mononuleotide SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3742-3749 AU Saparbaev-M. Kleibl-K. Laval-J. TI Escherichia coli, Saccharomyces cerevisiae, rat and human 3-methyladenine DNA glycosylases repair 1, N6-ethenoadenine when present in DNA SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3750-3755 AU Walther-Z. Hall-J-L. TI The uni chromosome of Chlamydomonas: histone genes and nucleosome structure SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3756-3763 AU Valerie-K. TI Replacing tryptophan-128 of T4 endonuclease V with a serine residue results in decreased enzymatic activity in vitro and in vivo SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3764-3770 AU Suda-T. Mishima-Y. Asakura-H. Kominami-R. TI Formation of a parallel-stranded DNA homoduplex by d(GGA) repeat oligonucleotides SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3771-3777 AU Lam-E. Lam-Y-K-P. TI Binding site requirements and differential representation of TGA factors in nuclear ASF-1 activity SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3778-3785 AU Kent-N-A. Mellor-J. TI Chromatin structure snap-shots: rapid nuclease digestion of chromatin in yeast SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3786-3787 AU Makowski-G-S. Davis-E-L. Aslanzadeh-J. Hopfer-S-M. TI Enhanced direct amplification of Guthrie card DNA following selective elution of PCR inhibitors SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3788-3789 AU Tokusashi-Y. Nishikawa-Y. Ogawa-K. TI Differentiation of the normal and mutant rat albumin genes on hepatic tissue sections by in situ PCR SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3790-3791 AU Ludwig-L-B. Hughes-B-J. Schwartz-S-A. TI Biotinylated probes in the electrophoretic mobility shift assay to examine specific dsDNA, ssDNA or RNA-protein interactions SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3792-3793 AU Wright-W-E. Shay-J-W. Piatyszek-M-A. TI Modifications of a telomeric repeat amplification protocol (TRAP) result in increased reliability, linearity and sensitivity SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3794-3795 AU Maruyama-I-N. Rakow-T-L. Maruyama-H-I. TI cRACE: a simple method for identification of the 5' end of mRNAs SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3796-3797 AU Richardson-T. Cato-S. Ramser-J. Kahl-G. Weising-K. TI Hybridization of microsatellites to RAPD: a new source of polymorphic markers SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3798-3799 AU Deuter-R. Pietsch-S. Hertel-S. Muller-O. TI A method for preparation of fecal DNA suitable for PCR SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3800-3801 AU Cifarelli-R-A. Gallitelli-M. Cellini-F. TI Random amplified hybrization microsatellites (RAHM): isolation of a new class of microsatellite-containing DNA clones SO Nucleic-Acids-Res. 1995 September 25. 23(18). P. 3802-3803 =============================================================== Nucleic Acids Research is published 25 times a year by Oxford University Press. The papers listed above will appear in the 25 September issue. If you would like further details about Nucleic Acids Research, including instructions for authors or details of subscription rates, please contact:- Richard Gedye Oxford University Press Walton Street Oxford OX2 6DP United Kingdom Tel: +44 1865 267785 Fax: +44 1865 267782 E-mail: gedyer@oup.co.uk Copyright in the table of contents listed above is held by Oxford University Press, but you are welcome to circulate it further, provided that Oxford University Press is credited as publisher and copyright holder. ***************************************************************** ***************************************************************** Subj: LITE: Nucleic Acids Research 23:19 Nucleic Acids Research Volume 23 Issue 19 - 11 October 1995 ============================================= Nucleic Acids Research - ISSN 0305 1048 Volume 23:19 11 October 1995 ============================================= Executive Editors:- R. T. Walker, Birmingham, UK R. J. Roberts, Beverly, MA, USA K. Calame, New York, NY, USA I. C. Eperon, Leicester, UK M. J. Gait, Cambridge, UK H. J. Gross, Wurzburg, Germany R. I. Gumport, Urbana, IL, USA R. B. Hallick, Tucson, AZ, USA S. Linn, Berkeley, CA, USA R. T. Simpson, University Park, PA, USA ============================================= CONTENTS ============================================= AU Chaudhry-M-A. Weinfeld-M. TI Induction of double-strand breaks by S1 nuclease, mung bean nuclease and nuclease P1 in DNA containing abasic sites and nicks SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3805-3809 AU Horton-J-K. Srivastava-D-K. Zmudzka-B-Z. Wilson-S-H. TI Strategic down-regulation of DNA polymerase beta by antisense RNA sensitizes mammalian cells to specific DNA damaging agents SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3810-3815 AU Kanegae-Y. Lee-G. Sato-Y. Tanaka-M. Nakai-M. Sakaki-T. Sugano-S. Saito-I. TI Efficient gene activation in mammalian cells by using recombinant adenovirus expressing site-specific Cre recombinase SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3816-3821 AU Zwicker-J. Gross-C. Lucibello-F-C. Truss-M. Ehlert-F. Engeland-K. Muller-R. TI Cell cycle regulation of cdc25C transcription is mediated by the periodic repression of the glutamine-rich activators NF-Y and Sp1 SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3822-3830 AU Svinarchuk-F. Monnot-M. Merle-A. Malvy-C. Fermandjian-S. TI The high stability of the triple helices formed between short purine oligonucleotides and SIV/HIV-2 vpx genes is determined by the targeted DNA structure SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3831-3836 AU Gohl-H-P. Grondahl-B. Thomm-M. TI Promoter recognition in archaea is mediated by transcription factors: identification of transcription factor aTFB from Methanococcus thermolithotrophicus as archaeal TATA-binding protein SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3837-3841 AU Scholler-P. Karger-A-E. Meier-Ewert-S. Lehrach-H. Delius-H. Hoheisel-J-D. TI fine-mapping of shotgun template-libraries; an efficient strategy for the systematic sequencing of genomic DNA SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3842-3849 AU Amir-Aslani-A. Mauffret-O. Bittoun-P. Sourgen-F. Monnot-M. Lescot-E. Fermandjian-S. TI Hairpins in a DNA site for topoisomerase II studied by 1H- and 31P-NMR SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3850-3857 AU Hildebrandt-M. Lacombe-M-L. Mesnildrey-S. Veron-M. TI A human NDP-kinase B sepcifically binds single-stranded poly-pyrimidine sequences SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3858-3864 AU Artandi-S-E. Merrell-K. Avitahl-N. Wong-K-K. Calame-K. TI TFE3 contains two activation domains, one acidic and the other proline-rich, that synergistically activate transcription SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3865-3871 AU Kabotyanski-E-B. Zhu-C. Kallick-D-A. Roth-D-B. TI Hairpin opening by single-strand-specific nucleases SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3872-3881 AU Goldstein-D-B. Clark-A-G. TI Microsatellite variation in North American populations of Drosophila melanogaster SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3882-3886 AU Reuning-U. Wilhelm-O. Nishiguchi-T. Guerrini-L. Blasi-F. Graeff-H. Schmitt-M. TI Inhibition of NF-kappaB-Rel A expression by antisense oligodeoxynucleotides suppresses synthesis of urokinase-type plasminogen activator (uPA) but not its inhibitor PAI-1 SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3887-3893 AU Bigey-P. Pratviel-G. Meunier-B. TI Cleavage of double-stranded DNA by 'metalloporphyrin-linker-oligonucleotide' molecules: influence of the linker SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3894-3900 AU DeStefano-J-J. TI The orientation of binding of human immunodeficiency virus reverse transcriptase on nucleic acid hybrids SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3901-3908 AU Rieger-A. Nassal-M. TI Distinct requirements for primary sequence in the 5'- and 3-part of a bulge in the hepatitis B virus RNA encapsidation signal revealed by a combined in vivo selection/in vitro amplification system SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3909-3915 AU Sahasrabudhe-P-V. Pon-R-T. Gmeiner-W-H. TI Effects of site-specific substitution of 5-fluorouridine on the stabilities of duplex DNA and RNA SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3916-3921 AU Hendry-P. McCall-M-J. Santiago-F-S. Jennings-P-A. TI In vitro activity of minimised hammerhead ribozymes SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3922-3927 AU Hendry-P. McCall-M-J. TI A comparison of the in vitro activity of DNA-armed and all-RNA hammerhead ribozymes SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3928-3936 AU Kim-K. Harshey-R-M. TI Mutational analysis of the att DNA-binding domain of phage Mu transposase SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3937-3943 AU Wagner-R. Debbie-P. Radman-M. TI Mutation detection using immobilized mismatch binding protein (MutS) SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3944-3948 AU Morgan-M-A. Kazakov-S-A. Hecht-S-M. TI Phosphoryl migration during the chemical synthesis of RNA SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3949-3953 AU Buchko-G-W. Cadet-J. Morin-B. Weinfeld-M. TI Photooxidation of d(TpG) by riboflavin and methylene blue. Isolation and characterization of thymidylyl-(3',5')-2-amino-5-[(2-deoxy-beta-D- erythro-pentofuranosyl)amino]-4H-imidazol-4-one and its primary decomposition product tymidylyl-(3',5')-2,2-diamino-4-[(2-deoxy-beta- D-erythro-pentofuranosyl)amino]-5(2H)-oxazolone SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3954-3961 AU McAteer-K. Ellis-P-D. Kennedy-M-A. TI The effects of sequence context on base dynamics at TpA steps in DNA studied by NMR SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3962-3966 AU Damha-M-J. Meng-B. Wang-D. Yannopoulos-C-G. Just-G. TI Structural basis for the RNA binding selectivity of oligonucleotide analogues containing alkylsulfide internucleoside linkages and 2'-substituted 3'-deoxyribonucleosides SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3967-3973 AU Herrera-J-E. Savkur-R. Olson-M-O-J. TI The ribonuclease activity of nucleolar protein B23 SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3974-3980 AU Grant-C-M. Miller-P-F. Hinnebusch-A-G. TI Sequences 5' of the first upstream open reading frame in GCN4 mRNA are required for efficient translational reinitiation SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3981-3989 AU Beigelman-L. Matulic-Adamic-J. Haeberli-P. Usman-N. Dong-B. Silverman-R-H. Khamnei-S. Torrence-P-F. TI Synthesis and biological activities of a phosphorodithioate analog of 2',5'-oligoadenylate SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3990-3995 AU Sonti-S-V. Griffor-M-C. Sano-T. Narayanswami-S. Bose-A. Cantor-C-R. Kausch-A-P. TI Large scale isolation of expression vector cassette by magnetic triple helix affinity capture SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3996-3997 AU Wu-J-R. Gilbert-D-M. TI Rapid DNA preparation for 2D gel analysis of replication intermediates SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.3998-3999 AU Kovacic-R-T. Comai-L. Bendich-A-J TI Protection of megabase DNA from shearing SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.4000-4001 AU Gilgen-M. Hofelein-C. Luthy-J. Hubner-Ph. TI Hydroxyquinoline overcomes PCR inhibition by UV- damaged mineral oil SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.4002-4003 AU Natarajan-D. Boulter-C-A. TI A lacZ-hygromycin fusion gene and its use in a gene trap vector for marking embryonic stem cells SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.4004-4005 AU Herzing-K. Ashworth-A. TI Construction of specific cosmids from YACs by homologous recombination in yeast SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.4006-4007 AU Yeatman-T-J. Mao-W. TI Identification of a differentially-expressed message associated with colon cancer liver metastasis using an improved method of differential display SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.4008-4009 AU He-M. Hamon-M. Liu-H. Kang-A. Taussig-M-J. TI Functional expression of a single-chain anti-progesterone antibody fragment in the cytoplasm of a mutant Escherichia coli SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.4010-4011 AU Fairhead-C. Heard-E. Arnaud-D. Avner-P. Dujon-B. TI Insertion of unique sites into YAC arms for rapid physical analysis following YAC transfer into mammalian cells SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.4012-4013 AU De Sario-A. Geigl-E-M. Bernardi-G. TI A rapid procedure for the compositional analysis of yeast artifical chromosomes SO Nucleic-Acids-Res. 1995 October 11. 23(19). P.4014-4015 ================================================================= ================================================================= Nucleic Acids Research is published 25 times a year by Oxford University Press. The papers listed above will appear in the 11 October 1995 issue. If you would like further details about Nucleic Acids Research, including instructions for authors or details of subscription rates, please contact:- Richard Gedye Oxford University Press Walton Street Oxford OX2 6DP United Kingdom Tel: +44 1865 267785 Fax: +44 1865 267782 E-mail: gedyer@oup.co.uk Copyright in the table of contents listed above is held by Oxford University Press, but you are welcome to circulate it further, provided that Oxford University Press is credited as publisher and copyright holder.