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top | BioSearch - BioInformatics - Organisms |
NewsGroups
dejaNews: bionet
bio-software
bio-www
News from
EBI: BioInformer
EMBNet: news
ExPaSy: Swiss-Flash
NCBI: whats new
NCBI: Newsletter
hot links
Amos Bairoch
BioToolKit
Biolinks.com
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Starting sites
EMBnet.CH /Svcs - ISREC - Geneva
EBI/Services - Sanger Center
Baylor (BCM)
NCBI [search]
Nobel Prices 97 - GeneCards
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Journals
lists: Beasley /1/2 - SJO - eJournals
Abbrev. of Jn: L. Hough's list - @expasy
Cell - Science - Nature/GB, US
Genes Dev. - EMBO J. - Development,
Neuron, CMLS (Experientia)
JBC, NAR,
PNAS ,JMB, MCB,
BioAssays , Technical Tips Online
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Get a sequence (find and fetch it)
NIH: Entrez: Nucleic Acid
- Protein
NIH: Genomes - Taxonomy
NIH: UniGene (human
mRNA/EST)
SRS: Hinxton - Heidelbg
NDB: Rutgers,
SDSC, EBI
(nucleic acid database)
GSDB: Maestro
Weizmann: GeneCards
Tools
PCR forum |
Databases: Amos
Bairoch's list
explained:: prot , nucl.acid
DNA Databases
NIH: Genbank(NIH/NCBI)
NIH: OMIM - online mendelian
inheritance in man
GDB - genome database
GSDB - genome sequence database
HGMD - Human Gene Mutation database
TIGR -
Protein Databases
Swissprot - PIR - MIPS - PDB, ATLAS, OWL(UK), OWL(US) /alt
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Similarity&Homology Searches:
(Blast, Fasta, Smith-Waterman)
EBI: tools - blast2, fasta3,
S-W
EMBNet.CH: WU-blast
NIH: blast,
blast2, PSI-blast, Cognitor
Baylor College Medecine: pep - dna
Indiana, IUBIO: species - keywords
Stanford, Arabidopsis: blast - fasta
Stanford,Yeast: blast
- fasta
Berkeley, Drosophila:: blast
EBI, Drosophila: blast
Multiple Sequence Aligment
EBI: clustalw
BCM: 2x - many
WUSTL: 8x500 MSA
Processsing of MSAs
Boxshade (shading
aligned sequences)
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DNA Motifs
Binding sites: GSF/Transfac,
TESS
Promoter: PromoterScan,
NIH/Signalscan
Gene prediction: genscan/alt, BCM_gene_finder, genie
Repetitive sequences: Repeat
masker2
Protein Motifs
ProDom/FR ProDom/UK,
ProfileScan, Pfam, Prosite
Pratt Bergen,
EBI, Pasteur
GeneFIND & ProClass
PIR, Swissprot: protein classes
COG (clusters of orthologous groups)
Cognitor
(blast against COG)
NDB: Structure
Finder
Heidelberg: Predict
protein
ExPaSy: Swiss-Model
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Dictionaries
Cell Biology , Biotech , Glossary
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Help
GCG: access (register)
EGCG: EMBNetCH,
EBI, IGBMC
BioComputing: EMBNet: CH,
GB, DK
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top | BioSearch - BioInformatics - Organisms |
Bio.net
Drosophila
Drososphila Labs
Switzerland
France
USA & world
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Drosophila - more links
FlyBase: EBI (UK ) - Indiana - Harvard - ||old-style: Australia - France - Israel - Japan
Information: The InteractiveFly[search], Virtual
Library, VectorDB - (Knife)
Information: P-elements
Genome Project:Berkeley: BDGP, EofD, blast
Genome Project:EBI: EDGP
, blast | DM in Swissprot
Protocols: Gerard Manning's
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Bio.net
YEAST |
Yeast - more links
Stanford: SGD [search] blast fasta , Sacc._VL - Yeast_VL
Sanger Center: S. Pombe /blast , S. cerevisiae /blast
MIPS: pedant
Other: YPD home - Yeast@MIPS - Yeast in Swissprot
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Bio.net
Celegans
Newsgroup
swmed.edu |
C. elegans
Entry: C. elegans virtual library
- Labs
AceDB at: Sanger - NAL - ZIA
BLAST at: Sanger
, St.
Louis |
Bio.net
Zebrafish |
Zebrafish
Zebrafish net: FR, JP, US |
Bio.net
chromosomes
genestructure
humanGenomeProject |
Human see: medical
links |
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Mouse
Mouse Genome Informatics: UK, FR, US,
JP |
Bio.net
Plants
Arabidopsis
maize |
Plants/Arabidopsis - more links
AIMS - ATGC - AtDB [search] - Arabinet
Gene Expression
Nottingham Stockcenter - WeedsWorld |
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